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	<title>Comments on: The PC1 in Mann and Jones [2003], Jones and Mann [2004]</title>
	<atom:link href="http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/feed/" rel="self" type="application/rss+xml" />
	<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/</link>
	<description>by Steve McIntyre</description>
	<lastBuildDate>Fri, 24 May 2013 01:54:18 +0000</lastBuildDate>
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		<title>By: Terry</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43422</link>
		<dc:creator><![CDATA[Terry]]></dc:creator>
		<pubDate>Mon, 13 Feb 2006 00:37:32 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43422</guid>
		<description><![CDATA[Does anybody know if there is any pre-processing of the proxy series before they are fed into MBH etc.?  To put it another way, are the proxy series simply plots of tree ring widths (or whatever), or are the raw measurements processed in some way to take into account things such as variation in growth rates over the life of the tree?

Thanks.]]></description>
		<content:encoded><![CDATA[<p>Does anybody know if there is any pre-processing of the proxy series before they are fed into MBH etc.?  To put it another way, are the proxy series simply plots of tree ring widths (or whatever), or are the raw measurements processed in some way to take into account things such as variation in growth rates over the life of the tree?</p>
<p>Thanks.</p>
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		<title>By: Steve Hemphill</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43421</link>
		<dc:creator><![CDATA[Steve Hemphill]]></dc:creator>
		<pubDate>Sun, 12 Feb 2006 16:45:46 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43421</guid>
		<description><![CDATA[If you would send them to me I&#039;d like to look at them.

Thanks,
Steve]]></description>
		<content:encoded><![CDATA[<p>If you would send them to me I&#8217;d like to look at them.</p>
<p>Thanks,<br />
Steve</p>
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		<title>By: Steve Hemphill</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43420</link>
		<dc:creator><![CDATA[Steve Hemphill]]></dc:creator>
		<pubDate>Sun, 12 Feb 2006 06:32:42 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43420</guid>
		<description><![CDATA[Steve - &lt;a href=&quot;http://www.climate2003.com/&quot; rel=&quot;nofollow&quot;&gt;your site&lt;/a&gt; lists some &lt;a href=&quot;http://www.climate2003.com/data/MM05_GRL/2004GL021750-hockeysticks.txt&quot; rel=&quot;nofollow&quot;&gt;random series&lt;/a&gt; applied to the MBH98 methodology.  I &lt;a href=&quot;http://myweb.cableone.net/shemphill/randomsintombh98.jpg&quot; rel=&quot;nofollow&quot;&gt;graphed&lt;/a&gt;  them, and was wondering if the math is still valid.


Thanks...

&lt;strong&gt;Steve Mc: &lt;/strong&gt;  No one&#039;s thrown any stones at this calculation.   Now these are not randomly chosen from the PC1s but were selected to illustrate high-end. But I suspect that, if you selected 14 at random from the population and flipped them to ensure orientation, and then applied O&amp;B methods, you&#039;d get results similar to O&amp;B. It would be a useful exercise. I&#039;ve kept all the simulated PC1s but they are 50 MB in size, although in 10 5 MB packages.]]></description>
		<content:encoded><![CDATA[<p>Steve &#8211; <a href="http://www.climate2003.com/" rel="nofollow">your site</a> lists some <a href="http://www.climate2003.com/data/MM05_GRL/2004GL021750-hockeysticks.txt" rel="nofollow">random series</a> applied to the MBH98 methodology.  I <a href="http://myweb.cableone.net/shemphill/randomsintombh98.jpg" rel="nofollow">graphed</a>  them, and was wondering if the math is still valid.</p>
<p>Thanks&#8230;</p>
<p><strong>Steve Mc: </strong>  No one&#8217;s thrown any stones at this calculation.   Now these are not randomly chosen from the PC1s but were selected to illustrate high-end. But I suspect that, if you selected 14 at random from the population and flipped them to ensure orientation, and then applied O&amp;B methods, you&#8217;d get results similar to O&amp;B. It would be a useful exercise. I&#8217;ve kept all the simulated PC1s but they are 50 MB in size, although in 10 5 MB packages.</p>
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		<title>By: jae</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43419</link>
		<dc:creator><![CDATA[jae]]></dc:creator>
		<pubDate>Sat, 11 Feb 2006 14:51:04 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43419</guid>
		<description><![CDATA[Nicolas:

Very interesting plots.

Like all living things, genetics also plays a very important part in tree growth rates, density, etc.  Therefore, you can probably find a tree to prove anything you want to.]]></description>
		<content:encoded><![CDATA[<p>Nicolas:</p>
<p>Very interesting plots.</p>
<p>Like all living things, genetics also plays a very important part in tree growth rates, density, etc.  Therefore, you can probably find a tree to prove anything you want to.</p>
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		<title>By: Nicholas</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43418</link>
		<dc:creator><![CDATA[Nicholas]]></dc:creator>
		<pubDate>Sat, 11 Feb 2006 06:41:47 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43418</guid>
		<description><![CDATA[Ah, thanks, interesting. As I said the mbh98datasummary.txt file which I&#039;m using to work out what each data set represents is confusing to me. First it describes each set according to the location, what it&#039;s measure, what it represents and who took the measurements. Then in a seperate section it lists the data sets present along with the start year, end year, lat/long and source study. The oddity is, the first section ONLY mentions Briffa K. and Schweingruber F.H. in relation to &quot;Dendro density&quot;, not &quot;Dendro ring widths&quot;, but the sets like CA556 are credited to Briffa and Schweingruber, which according to the lack of &quot;x&quot; are ring widths, not density. I find that a bit misleading. Now that you&#039;ve pointed it out, I found the section where it mentions what the &quot;x&quot; means. Thanks for explaining it.

Also interesting is that when I look at the corresponding ring width and density data sets, some of them seem to have very good correlation, such as Az555/Az555x and Az554/Az554x but others like Az553/Az553x have what look like no or negative correlation. Perhaps what is happening is, if the soil is good and precipitation is plenty, higher (lower?) temperatures are allowing the trees to make wider AND denser rings, whereas in other areas the soil is bad or precipitation is poor, and higher (lower?) temperatures are allowing for wider rings, but no more density can be achieved - and in some cases lower. That&#039;s just a guess, but it seems like there must be some process determining whether there is good correlation between the two attributes, or not.

None of the Ca width/density comparisons look to me like a negative correlation but overall the correlation doesn&#039;t seem to be as strong as those two Az series, which look almost identical between the width and density graphs in terms of shape.]]></description>
		<content:encoded><![CDATA[<p>Ah, thanks, interesting. As I said the mbh98datasummary.txt file which I&#8217;m using to work out what each data set represents is confusing to me. First it describes each set according to the location, what it&#8217;s measure, what it represents and who took the measurements. Then in a seperate section it lists the data sets present along with the start year, end year, lat/long and source study. The oddity is, the first section ONLY mentions Briffa K. and Schweingruber F.H. in relation to &#8220;Dendro density&#8221;, not &#8220;Dendro ring widths&#8221;, but the sets like CA556 are credited to Briffa and Schweingruber, which according to the lack of &#8220;x&#8221; are ring widths, not density. I find that a bit misleading. Now that you&#8217;ve pointed it out, I found the section where it mentions what the &#8220;x&#8221; means. Thanks for explaining it.</p>
<p>Also interesting is that when I look at the corresponding ring width and density data sets, some of them seem to have very good correlation, such as Az555/Az555x and Az554/Az554x but others like Az553/Az553x have what look like no or negative correlation. Perhaps what is happening is, if the soil is good and precipitation is plenty, higher (lower?) temperatures are allowing the trees to make wider AND denser rings, whereas in other areas the soil is bad or precipitation is poor, and higher (lower?) temperatures are allowing for wider rings, but no more density can be achieved &#8211; and in some cases lower. That&#8217;s just a guess, but it seems like there must be some process determining whether there is good correlation between the two attributes, or not.</p>
<p>None of the Ca width/density comparisons look to me like a negative correlation but overall the correlation doesn&#8217;t seem to be as strong as those two Az series, which look almost identical between the width and density graphs in terms of shape.</p>
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		<title>By: Steve McIntyre</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43417</link>
		<dc:creator><![CDATA[Steve McIntyre]]></dc:creator>
		<pubDate>Sat, 11 Feb 2006 04:43:12 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43417</guid>
		<description><![CDATA[Nicholas, the java script is nice for showing the proxies. Re #10 - the x suffix shows a density (mxd) series; the others are ring width.  ca534 is the bristlecone Sheep Mountain that you&#039;ve heard lots about - it gives over 80% of the eigenvector weighting in the MJ04 PC1. Nice stuff.  I&#039;ve posted up data files for the O&amp;B proxies - to the extent that I&#039;ve figured them out. Those would be of current interest as well.]]></description>
		<content:encoded><![CDATA[<p>Nicholas, the java script is nice for showing the proxies. Re #10 &#8211; the x suffix shows a density (mxd) series; the others are ring width.  ca534 is the bristlecone Sheep Mountain that you&#8217;ve heard lots about &#8211; it gives over 80% of the eigenvector weighting in the MJ04 PC1. Nice stuff.  I&#8217;ve posted up data files for the O&amp;B proxies &#8211; to the extent that I&#8217;ve figured them out. Those would be of current interest as well.</p>
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		<title>By: Nicholas</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43416</link>
		<dc:creator><![CDATA[Nicholas]]></dc:creator>
		<pubDate>Sat, 11 Feb 2006 04:23:12 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43416</guid>
		<description><![CDATA[Of greater relevance to this post (The PC1 in Mann and Jones [2003]), &lt;a HREF=&quot;http://x256.org/~hb/MBH98/index2.html?Set_0=ca534&amp;Set_0=ca535&amp;Set_0=nm572&amp;Set_0=nv515&amp;Set_0=nv516&amp;Set_0=ut509&amp;Set_0=&amp;Normalize_0=mid_100&amp;Temp_0=on&amp;Smooth_0=10&amp;Set_1=ca534&amp;Set_1=ca535&amp;Set_1=nm572&amp;Set_1=nv515&amp;Set_1=nv516&amp;Set_1=ut509&amp;Set_1=&amp;Normalize_1=mid_100&amp;Temp_1=on&amp;Smooth_1=10&amp;Average_1=on&amp;Set_2=ca535&amp;Set_2=nm572&amp;Set_2=nv515&amp;Set_2=nv516&amp;Set_2=ut509&amp;Set_2=&amp;Normalize_2=mid_100&amp;Temp_2=on&amp;Smooth_2=10&amp;Set_3=ca535&amp;Set_3=nm572&amp;Set_3=nv515&amp;Set_3=nv516&amp;Set_3=ut509&amp;Set_3=&amp;Normalize_3=mid_100&amp;Temp_3=on&amp;Smooth_3=10&amp;Average_3=on&amp;Set_4=&amp;adaptation=0.1&amp;coeff=1&amp;width=800&amp;height=400&quot; rel=&quot;nofollow&quot;&gt;here&#039;s&lt;/a&gt; an interesting graph. The top one is of the six series mentioned here. Note how Ca534 spikes. Below it is the regular average of all six. Pronounced &quot;hockey-stick&quot; shape. Then, below, I repeat the same exercise without Ca534. Hockey stick gone! And for my next trick...

&lt;a HREF=&quot;http://x256.org/~hb/MBH98/index2.html?Set_0=ca064&amp;Set_0=ca065&amp;Set_0=ca066&amp;Set_0=ca067&amp;Set_0=ca073&amp;Set_0=ca076&amp;Set_0=ca079&amp;Set_0=ca084&amp;Set_0=ca085&amp;Set_0=ca087&amp;Set_0=&amp;Normalize_0=all&amp;Temp_0=on&amp;Smooth_0=25&amp;Set_1=ca064&amp;Set_1=ca065&amp;Set_1=ca066&amp;Set_1=ca067&amp;Set_1=ca073&amp;Set_1=ca076&amp;Set_1=ca079&amp;Set_1=ca084&amp;Set_1=ca085&amp;Set_1=ca087&amp;Set_1=&amp;Normalize_1=all&amp;Temp_1=on&amp;Smooth_1=25&amp;Average_1=on&amp;Set_2=&amp;adaptation=0.1&amp;coeff=1&amp;width=800&amp;height=400&quot; rel=&quot;nofollow&quot;&gt;Here&#039;s&lt;/a&gt; a graph of the first ten in the CA series, with their average below, to demonstrate that the &quot;hockey-stick&quot; shape is not common to many of these series. It&#039;s in a few out of hundreds, from what I have seen so far, but it&#039;s of such great magnitude that it tends to dominate the shape of the average of a large number of the data series. I can&#039;t imagine how much effect weighting those particular proxies by 80% or more must have on the final result.]]></description>
		<content:encoded><![CDATA[<p>Of greater relevance to this post (The PC1 in Mann and Jones [2003]), <a HREF="http://x256.org/~hb/MBH98/index2.html?Set_0=ca534&amp;Set_0=ca535&amp;Set_0=nm572&amp;Set_0=nv515&amp;Set_0=nv516&amp;Set_0=ut509&amp;Set_0=&amp;Normalize_0=mid_100&amp;Temp_0=on&amp;Smooth_0=10&amp;Set_1=ca534&amp;Set_1=ca535&amp;Set_1=nm572&amp;Set_1=nv515&amp;Set_1=nv516&amp;Set_1=ut509&amp;Set_1=&amp;Normalize_1=mid_100&amp;Temp_1=on&amp;Smooth_1=10&amp;Average_1=on&amp;Set_2=ca535&amp;Set_2=nm572&amp;Set_2=nv515&amp;Set_2=nv516&amp;Set_2=ut509&amp;Set_2=&amp;Normalize_2=mid_100&amp;Temp_2=on&amp;Smooth_2=10&amp;Set_3=ca535&amp;Set_3=nm572&amp;Set_3=nv515&amp;Set_3=nv516&amp;Set_3=ut509&amp;Set_3=&amp;Normalize_3=mid_100&amp;Temp_3=on&amp;Smooth_3=10&amp;Average_3=on&amp;Set_4=&amp;adaptation=0.1&amp;coeff=1&amp;width=800&amp;height=400" rel="nofollow">here&#8217;s</a> an interesting graph. The top one is of the six series mentioned here. Note how Ca534 spikes. Below it is the regular average of all six. Pronounced &#8220;hockey-stick&#8221; shape. Then, below, I repeat the same exercise without Ca534. Hockey stick gone! And for my next trick&#8230;</p>
<p><a HREF="http://x256.org/~hb/MBH98/index2.html?Set_0=ca064&amp;Set_0=ca065&amp;Set_0=ca066&amp;Set_0=ca067&amp;Set_0=ca073&amp;Set_0=ca076&amp;Set_0=ca079&amp;Set_0=ca084&amp;Set_0=ca085&amp;Set_0=ca087&amp;Set_0=&amp;Normalize_0=all&amp;Temp_0=on&amp;Smooth_0=25&amp;Set_1=ca064&amp;Set_1=ca065&amp;Set_1=ca066&amp;Set_1=ca067&amp;Set_1=ca073&amp;Set_1=ca076&amp;Set_1=ca079&amp;Set_1=ca084&amp;Set_1=ca085&amp;Set_1=ca087&amp;Set_1=&amp;Normalize_1=all&amp;Temp_1=on&amp;Smooth_1=25&amp;Average_1=on&amp;Set_2=&amp;adaptation=0.1&amp;coeff=1&amp;width=800&amp;height=400" rel="nofollow">Here&#8217;s</a> a graph of the first ten in the CA series, with their average below, to demonstrate that the &#8220;hockey-stick&#8221; shape is not common to many of these series. It&#8217;s in a few out of hundreds, from what I have seen so far, but it&#8217;s of such great magnitude that it tends to dominate the shape of the average of a large number of the data series. I can&#8217;t imagine how much effect weighting those particular proxies by 80% or more must have on the final result.</p>
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		<title>By: Nicholas</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43415</link>
		<dc:creator><![CDATA[Nicholas]]></dc:creator>
		<pubDate>Sat, 11 Feb 2006 04:02:49 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43415</guid>
		<description><![CDATA[jaw : Yes, I did, &lt;a HREF=&quot;http://x256.org/~hb/MBH98/index2.html?Set_0=az553&amp;Set_0=az554&amp;Set_0=az555&amp;Set_0=&amp;Normalize_0=all&amp;Temp_0=on&amp;Smooth_0=25&amp;Set_1=az553x&amp;Set_1=az554x&amp;Set_1=az555x&amp;Set_1=&amp;Normalize_1=all&amp;Temp_1=on&amp;Smooth_1=25&amp;Set_2=ca556&amp;Set_2=ca557&amp;Set_2=ca560&amp;Set_2=&amp;Normalize_2=all&amp;Temp_2=on&amp;Smooth_2=25&amp;Set_3=ca556x&amp;Set_3=ca557x&amp;Set_3=ca560x&amp;Set_3=&amp;Normalize_3=all&amp;Temp_3=on&amp;Smooth_3=25&amp;Set_4=ca556x&amp;Set_4=&amp;Normalize_4=all&amp;Raw_4=on&amp;Smooth_4=&amp;Set_5=&amp;adaptation=0.1&amp;coeff=1&amp;width=800&amp;height=400&quot; rel=&quot;nofollow&quot;&gt;here&#039;s&lt;/a&gt;  a comparison for both the Az and Ca series. (First Az..., then Az...x, then Ca..., then Ca...x).

They&#039;re actually dynamically generated graphs, you can change what they draw yourself if you want to fiddle with it.

I can&#039;t work out what&#039;s going on. Perhaps &quot;x&quot; indicates that the original authors published a new set of data based on additional trees? Some of them just seem to have been renormalized between the non-x/x series, whereas others look quite different. Ca556x seems a bit odd, I&#039;ve graphed it down the bottom, it starts out really far into the negative zone - perhaps because it&#039;s based on a tree which started growing around the start of the series, maybe in a bad location, so didn&#039;t do well at first.]]></description>
		<content:encoded><![CDATA[<p>jaw : Yes, I did, <a HREF="http://x256.org/~hb/MBH98/index2.html?Set_0=az553&amp;Set_0=az554&amp;Set_0=az555&amp;Set_0=&amp;Normalize_0=all&amp;Temp_0=on&amp;Smooth_0=25&amp;Set_1=az553x&amp;Set_1=az554x&amp;Set_1=az555x&amp;Set_1=&amp;Normalize_1=all&amp;Temp_1=on&amp;Smooth_1=25&amp;Set_2=ca556&amp;Set_2=ca557&amp;Set_2=ca560&amp;Set_2=&amp;Normalize_2=all&amp;Temp_2=on&amp;Smooth_2=25&amp;Set_3=ca556x&amp;Set_3=ca557x&amp;Set_3=ca560x&amp;Set_3=&amp;Normalize_3=all&amp;Temp_3=on&amp;Smooth_3=25&amp;Set_4=ca556x&amp;Set_4=&amp;Normalize_4=all&amp;Raw_4=on&amp;Smooth_4=&amp;Set_5=&amp;adaptation=0.1&amp;coeff=1&amp;width=800&amp;height=400" rel="nofollow">here&#8217;s</a>  a comparison for both the Az and Ca series. (First Az&#8230;, then Az&#8230;x, then Ca&#8230;, then Ca&#8230;x).</p>
<p>They&#8217;re actually dynamically generated graphs, you can change what they draw yourself if you want to fiddle with it.</p>
<p>I can&#8217;t work out what&#8217;s going on. Perhaps &#8220;x&#8221; indicates that the original authors published a new set of data based on additional trees? Some of them just seem to have been renormalized between the non-x/x series, whereas others look quite different. Ca556x seems a bit odd, I&#8217;ve graphed it down the bottom, it starts out really far into the negative zone &#8211; perhaps because it&#8217;s based on a tree which started growing around the start of the series, maybe in a bad location, so didn&#8217;t do well at first.</p>
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		<title>By: jae</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43414</link>
		<dc:creator><![CDATA[jae]]></dc:creator>
		<pubDate>Fri, 10 Feb 2006 18:43:56 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43414</guid>
		<description><![CDATA[Nicolas:

You graphed Az553x/554x/555x; did you also graph Az553/554/555.  It would be interesting to see what Mann did here.]]></description>
		<content:encoded><![CDATA[<p>Nicolas:</p>
<p>You graphed Az553x/554x/555x; did you also graph Az553/554/555.  It would be interesting to see what Mann did here.</p>
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		<title>By: Nicholas</title>
		<link>http://climateaudit.org/2006/02/08/the-pc1-in-mann-and-jones-2003-jones-and-mann-2004/#comment-43413</link>
		<dc:creator><![CDATA[Nicholas]]></dc:creator>
		<pubDate>Fri, 10 Feb 2006 17:37:51 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=522#comment-43413</guid>
		<description><![CDATA[Interesting, I just noticed, the California tree ring density series don&#039;t seem to have the same post-1900 spike that the California tree ring width series have. I wonder if it&#039;s due to different trees being studied, or that whatever caused the rings to get wider didn&#039;t affect the density? I guess denser rings may well be thinner in general.

Correction: When I said &quot;North-West USA&quot; I meant &quot;Western Northern America&quot;, which is not quite the same thing. I guess &quot;Western USA&quot; is a better description, since I don&#039;t see any Canadian sites.]]></description>
		<content:encoded><![CDATA[<p>Interesting, I just noticed, the California tree ring density series don&#8217;t seem to have the same post-1900 spike that the California tree ring width series have. I wonder if it&#8217;s due to different trees being studied, or that whatever caused the rings to get wider didn&#8217;t affect the density? I guess denser rings may well be thinner in general.</p>
<p>Correction: When I said &#8220;North-West USA&#8221; I meant &#8220;Western Northern America&#8221;, which is not quite the same thing. I guess &#8220;Western USA&#8221; is a better description, since I don&#8217;t see any Canadian sites.</p>
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