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	<title>Comments on: Replication Problems: Mannian Verification Stats</title>
	<atom:link href="http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/feed/" rel="self" type="application/rss+xml" />
	<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/</link>
	<description>by Steve McIntyre</description>
	<lastBuildDate>Wed, 19 Jun 2013 05:32:09 +0000</lastBuildDate>
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	<item>
		<title>By: UC</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-169000</link>
		<dc:creator><![CDATA[UC]]></dc:creator>
		<pubDate>Wed, 14 Jan 2009 20:26:01 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-169000</guid>
		<description><![CDATA[u=calc_error(&#039;SH&#039;,&#039;&#039;,&#039;iHAD&#039;);


http://signals.auditblogs.com/files/2009/01/early1.txt

http://signals.auditblogs.com/files/2009/01/late1.txt

http://signals.auditblogs.com/files/2009/01/inst1.txt]]></description>
		<content:encoded><![CDATA[<p>u=calc_error(&#8216;SH&#8217;,&#8221;,&#8217;iHAD&#8217;);</p>
<p><a href="http://signals.auditblogs.com/files/2009/01/early1.txt" rel="nofollow">http://signals.auditblogs.com/files/2009/01/early1.txt</a></p>
<p><a href="http://signals.auditblogs.com/files/2009/01/late1.txt" rel="nofollow">http://signals.auditblogs.com/files/2009/01/late1.txt</a></p>
<p><a href="http://signals.auditblogs.com/files/2009/01/inst1.txt" rel="nofollow">http://signals.auditblogs.com/files/2009/01/inst1.txt</a></p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Steve McIntyre</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168999</link>
		<dc:creator><![CDATA[Steve McIntyre]]></dc:creator>
		<pubDate>Tue, 13 Jan 2009 21:58:18 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168999</guid>
		<description><![CDATA[#42. Excellent.

UC, can you post up the full e_recon and l_recon series for this example?]]></description>
		<content:encoded><![CDATA[<p>#42. Excellent.</p>
<p>UC, can you post up the full e_recon and l_recon series for this example?</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: UC</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168998</link>
		<dc:creator><![CDATA[UC]]></dc:creator>
		<pubDate>Tue, 13 Jan 2009 15:21:36 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168998</guid>
		<description><![CDATA[&lt;blockquote&gt;# century early_RE early_CE early_r2 late_RE late_CE late_r2 average_RE average_CE average_r2 adjusted_RE adjusted_CE adjusted_r2
# 1000 0.0746 -1.663 0.3552 0.7194 0.1475 0.303 0.397 -0.758 0.3291 0.397 -0.758 0.3291
&lt;/blockquote&gt;


At least r2 problem can be solved now ( see http://www.climateaudit.org/?p=4833 )

&lt;a href=&quot;http://signals.auditblogs.com/files/2009/01/e_recon.txt&quot; rel=&quot;nofollow&quot;&gt;Here&#039;s&lt;/a&gt;

  [e_recon(vals1:vale1) inst(vals1:vale1) l_recon(vals2:vale2) inst(vals2:vale2)]

from calc_error.m, and

load e_recon.txt
&gt;&gt; corrcoef(e_recon(:,1),e_recon(:,2)).^2

ans =

    1.0000    0.3030
    0.3030    1.0000

&gt;&gt; corrcoef(e_recon(:,3),e_recon(:,4)).^2

ans =

    1.0000    0.3552
    0.3552    1.0000



matches with the ones archived.]]></description>
		<content:encoded><![CDATA[<blockquote><p># century early_RE early_CE early_r2 late_RE late_CE late_r2 average_RE average_CE average_r2 adjusted_RE adjusted_CE adjusted_r2<br />
# 1000 0.0746 -1.663 0.3552 0.7194 0.1475 0.303 0.397 -0.758 0.3291 0.397 -0.758 0.3291
</p></blockquote>
<p>At least r2 problem can be solved now ( see <a href="http://www.climateaudit.org/?p=4833" rel="nofollow">http://www.climateaudit.org/?p=4833</a> )</p>
<p><a href="http://signals.auditblogs.com/files/2009/01/e_recon.txt" rel="nofollow">Here&#8217;s</a></p>
<p>  [e_recon(vals1:vale1) inst(vals1:vale1) l_recon(vals2:vale2) inst(vals2:vale2)]</p>
<p>from calc_error.m, and</p>
<p>load e_recon.txt<br />
&gt;&gt; corrcoef(e_recon(:,1),e_recon(:,2)).^2</p>
<p>ans =</p>
<p>    1.0000    0.3030<br />
    0.3030    1.0000</p>
<p>&gt;&gt; corrcoef(e_recon(:,3),e_recon(:,4)).^2</p>
<p>ans =</p>
<p>    1.0000    0.3552<br />
    0.3552    1.0000</p>
<p>matches with the ones archived.</p>
]]></content:encoded>
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	<item>
		<title>By: Steve McIntyre</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168997</link>
		<dc:creator><![CDATA[Steve McIntyre]]></dc:creator>
		<pubDate>Mon, 01 Dec 2008 20:04:35 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168997</guid>
		<description><![CDATA[#40. Yes, I can confirm that 0.05 smoothing was used in newtemp. As others have observed, it&#039;s pretty hard to tell from the program, because it&#039;s set to both 0.05 and 0.1 at different points in the doindexxx.m program.  This split seems to get undone later in CPS operations, but perhaps not in the EIV operations. What a mess.

For reference: in the newtemp/ directory,
HAD_NH_reform is identical to the version at Mann&#039;s website;
tempn95infxxx is identical once again, just under a new name
stdtempn95infxxx - is the same series, re-scaled
nhlinfxxx is obtained by .05 smoothing of stdtempn95infxxx

and, mutatis mutandi, for SH and GL.

Here&#039;s a plot of their &quot;target&quot; smoothed temperature series. How many degrees of freedom in Nychka terms are in this sucker?  I&#039;d be surprised if it was out of the single digits.

&lt;a href=&quot;http://www.climateaudit.org/wp-content/uploads/2008/12/emulat68.gif&quot; rel=&quot;nofollow&quot;&gt;&lt;/a&gt;]]></description>
		<content:encoded><![CDATA[<p>#40. Yes, I can confirm that 0.05 smoothing was used in newtemp. As others have observed, it&#8217;s pretty hard to tell from the program, because it&#8217;s set to both 0.05 and 0.1 at different points in the doindexxx.m program.  This split seems to get undone later in CPS operations, but perhaps not in the EIV operations. What a mess.</p>
<p>For reference: in the newtemp/ directory,<br />
HAD_NH_reform is identical to the version at Mann&#8217;s website;<br />
tempn95infxxx is identical once again, just under a new name<br />
stdtempn95infxxx &#8211; is the same series, re-scaled<br />
nhlinfxxx is obtained by .05 smoothing of stdtempn95infxxx</p>
<p>and, mutatis mutandi, for SH and GL.</p>
<p>Here&#8217;s a plot of their &#8220;target&#8221; smoothed temperature series. How many degrees of freedom in Nychka terms are in this sucker?  I&#8217;d be surprised if it was out of the single digits.</p>
<p><a href="http://www.climateaudit.org/wp-content/uploads/2008/12/emulat68.gif" rel="nofollow"></a></p>
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	</item>
	<item>
		<title>By: Jean S</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168996</link>
		<dc:creator><![CDATA[Jean S]]></dc:creator>
		<pubDate>Mon, 01 Dec 2008 10:37:21 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168996</guid>
		<description><![CDATA[Re: &lt;a href=&quot;#comment-314098&quot; rel=&quot;nofollow&quot;&gt;UC (#39)&lt;/a&gt;,
Ah, frequency 0.05 was used this time. Can anyone keep track which smoothing (frequencies 0.05/0.1) is used in whatever operation? Especially, how were the final series used to calculate the verification stats in veri1850_1895sm.m actually smoothed?]]></description>
		<content:encoded><![CDATA[<p>Re: <a href="#comment-314098" rel="nofollow">UC (#39)</a>,<br />
Ah, frequency 0.05 was used this time. Can anyone keep track which smoothing (frequencies 0.05/0.1) is used in whatever operation? Especially, how were the final series used to calculate the verification stats in veri1850_1895sm.m actually smoothed?</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: UC</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168995</link>
		<dc:creator><![CDATA[UC]]></dc:creator>
		<pubDate>Mon, 01 Dec 2008 07:10:57 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168995</guid>
		<description><![CDATA[Re: &lt;a href=&quot;#comment-313679&quot; rel=&quot;nofollow&quot;&gt;UC (#25)&lt;/a&gt;,

http://www.meteo.psu.edu/~mann/supplements/MultiproxyMeans07/code/codeprepdata/Readme.txt :


&lt;blockquote&gt;***Correction (29 Nov 2008): clihybrid.m added to directory.

&lt;/blockquote&gt;

Thanks, Dr. Mann. I can now run the prepinputforrecon.m, but I had  to add manually folders such as

C:\holocene\s1\zuz10\work1\temann\zzrecon1209\nhglfulihad\highf ,

do you want me to make a turn-key version ? Something I did with the &lt;a href=&quot;http://signals.auditblogs.com/2008/07/01/hockeystick-for-matlab/&quot; rel=&quot;nofollow&quot;&gt;hockeystick&lt;/a&gt;  ? Or would you prefer GUI ?]]></description>
		<content:encoded><![CDATA[<p>Re: <a href="#comment-313679" rel="nofollow">UC (#25)</a>,</p>
<p><a href="http://www.meteo.psu.edu/~mann/supplements/MultiproxyMeans07/code/codeprepdata/Readme.txt" rel="nofollow">http://www.meteo.psu.edu/~mann/supplements/MultiproxyMeans07/code/codeprepdata/Readme.txt</a> :</p>
<blockquote><p>***Correction (29 Nov 2008): clihybrid.m added to directory.</p>
</blockquote>
<p>Thanks, Dr. Mann. I can now run the prepinputforrecon.m, but I had  to add manually folders such as</p>
<p>C:\holocene\s1\zuz10\work1\temann\zzrecon1209\nhglfulihad\highf ,</p>
<p>do you want me to make a turn-key version ? Something I did with the <a href="http://signals.auditblogs.com/2008/07/01/hockeystick-for-matlab/" rel="nofollow">hockeystick</a>  ? Or would you prefer GUI ?</p>
]]></content:encoded>
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	<item>
		<title>By: Another pro-global warming comment, effective PR at work! &#171; Fabius Maximus</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168994</link>
		<dc:creator><![CDATA[Another pro-global warming comment, effective PR at work! &#171; Fabius Maximus]]></dc:creator>
		<pubDate>Mon, 01 Dec 2008 00:58:42 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168994</guid>
		<description><![CDATA[[...] Even now work continues, attempting to make sense of Mann&#8217;s hodge-podge of code and data (see this and this).  Hence the &#8220;peer review&#8221; failed. Their review might as well consisted [...]]]></description>
		<content:encoded><![CDATA[<p>[...] Even now work continues, attempting to make sense of Mann&#8217;s hodge-podge of code and data (see this and this).  Hence the &#8220;peer review&#8221; failed. Their review might as well consisted [...]</p>
]]></content:encoded>
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		<title>By: RLGrin</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168993</link>
		<dc:creator><![CDATA[RLGrin]]></dc:creator>
		<pubDate>Fri, 28 Nov 2008 16:11:03 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168993</guid>
		<description><![CDATA[I wouldn&#039;t be surprised if Mann et al intentionally published bad data to send everyone on a wild goose chase. For what it&#039;s worth, DON&#039;T trust and verify everything.]]></description>
		<content:encoded><![CDATA[<p>I wouldn&#8217;t be surprised if Mann et al intentionally published bad data to send everyone on a wild goose chase. For what it&#8217;s worth, DON&#8217;T trust and verify everything.</p>
]]></content:encoded>
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	<item>
		<title>By: theduke</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168992</link>
		<dc:creator><![CDATA[theduke]]></dc:creator>
		<pubDate>Fri, 28 Nov 2008 15:55:41 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168992</guid>
		<description><![CDATA[&quot;We are not sceptical enough about the data.&quot;

I guess she&#039;s not made it to Climate Audit.

http://www.smh.com.au/news/opinion/miranda-devine/beware-the-church-of-climate-alarm/2008/11/26/1227491635989.html]]></description>
		<content:encoded><![CDATA[<p>&#8220;We are not sceptical enough about the data.&#8221;</p>
<p>I guess she&#8217;s not made it to Climate Audit.</p>
<p><a href="http://www.smh.com.au/news/opinion/miranda-devine/beware-the-church-of-climate-alarm/2008/11/26/1227491635989.html" rel="nofollow">http://www.smh.com.au/news/opinion/miranda-devine/beware-the-church-of-climate-alarm/2008/11/26/1227491635989.html</a></p>
]]></content:encoded>
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	<item>
		<title>By: Poha</title>
		<link>http://climateaudit.org/2008/11/25/replication-problems-mannian-verification-stats/#comment-168991</link>
		<dc:creator><![CDATA[Poha]]></dc:creator>
		<pubDate>Fri, 28 Nov 2008 14:59:44 +0000</pubDate>
		<guid isPermaLink="false">http://www.climateaudit.org/?p=4449#comment-168991</guid>
		<description><![CDATA[Roger Bacon (1214-1294):
&quot;Quatuor vero sunt maxima comprehendendæ veritatis offendicula, quæ omnem quemcumque sapientem impediunt, et vix aliquem permittunt ad verum titulum sapientiæ pervenire: videlicet fragilis et indignæ auctoritatis exemplum, consuetudinis diuturnitas, vulgi sensus imperiti, et propriæ ignorantiæ occultatio cum ostentatione sapientiæ apparentis.&quot;
(There are four barriers blocking the road to truth: submission to unworthy authority, the influence of custom, popular prejudice, and concealment of one&#039;s ignorance with a technical show of wisdom.)]]></description>
		<content:encoded><![CDATA[<p>Roger Bacon (1214-1294):<br />
&#8220;Quatuor vero sunt maxima comprehendendæ veritatis offendicula, quæ omnem quemcumque sapientem impediunt, et vix aliquem permittunt ad verum titulum sapientiæ pervenire: videlicet fragilis et indignæ auctoritatis exemplum, consuetudinis diuturnitas, vulgi sensus imperiti, et propriæ ignorantiæ occultatio cum ostentatione sapientiæ apparentis.&#8221;<br />
(There are four barriers blocking the road to truth: submission to unworthy authority, the influence of custom, popular prejudice, and concealment of one&#8217;s ignorance with a technical show of wisdom.)</p>
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